WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C04D8.1d.1 Sequence Name  C04D8.1d.1
Length (nt)  3890   Chromosome Location  III: 8507635-8518878
Chromosome . Primary Identifier  III Chromosome Location . Start  8507635
Chromosome Location . End  8518878 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C04D8.1d.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00015418 pac-1 C04D8.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C04D8.1d C04D8.1d 3417   III: 8507635-8507734

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C04D8.1d.1 8507635 8518878 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

11 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon98069   100   III: 8507635-8507734 Caenorhabditis elegans
Exon98072   221   III: 8507813-8508033 Caenorhabditis elegans
Exon98077   255   III: 8508727-8508981 Caenorhabditis elegans
Exon98082   312   III: 8509240-8509551 Caenorhabditis elegans
Exon98089   148   III: 8513203-8513350 Caenorhabditis elegans
Exon98094   88   III: 8514023-8514110 Caenorhabditis elegans
Exon98100   898   III: 8515062-8515959 Caenorhabditis elegans
Exon98106   846   III: 8516359-8517204 Caenorhabditis elegans
Exon98112   146   III: 8517320-8517465 Caenorhabditis elegans
Exon98118   211   III: 8517517-8517727 Caenorhabditis elegans
Exon98124   665   III: 8518214-8518878 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C04D8.1d.1 8507635 8518878 1

1 Sequence

Length
3890

1 Sequence Ontology Term

Identifier Name Description
transcript