WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C06E1.10.1 Sequence Name  C06E1.10.1
Length (nt)  3642   Chromosome Location  III: 8609882-8614569
Chromosome . Primary Identifier  III Chromosome Location . Start  8609882
Chromosome Location . End  8614569 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C06E1.10.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00015525 rha-2 C06E1.10 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C06E1.10 C06E1.10 3447   III: 8610064-8610234

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C06E1.10.1 8609882 8614569 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

13 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon98291   353   III: 8609882-8610234 Caenorhabditis elegans
Exon98292   565   III: 8610639-8611203 Caenorhabditis elegans
Exon98293   173   III: 8611273-8611445 Caenorhabditis elegans
Exon98294   176   III: 8611528-8611703 Caenorhabditis elegans
Exon98295   503   III: 8611768-8612270 Caenorhabditis elegans
Exon98296   173   III: 8612314-8612486 Caenorhabditis elegans
Exon98297   478   III: 8612536-8613013 Caenorhabditis elegans
Exon98298   165   III: 8613060-8613224 Caenorhabditis elegans
Exon98299   416   III: 8613297-8613712 Caenorhabditis elegans
Exon98300   298   III: 8613777-8614074 Caenorhabditis elegans
Exon98301   98   III: 8614122-8614219 Caenorhabditis elegans
Exon98302   158   III: 8614283-8614440 Caenorhabditis elegans
Exon98303   86   III: 8614484-8614569 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C06E1.10.1 8609882 8614569 -1

1 Sequence

Length
3642

1 Sequence Ontology Term

Identifier Name Description
transcript