WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00006314 Gene Name  sup-5
Sequence Name  ? B0523.t1 Brief Description  sup-5 encodes a tryptophan tRNA; sup-5 mutations were first identified as suppressors of a subset of null mutations that affect muscle structure and assembly; further characterization indicated that sup-5 mutations function as informational suppressors that confer allele-specific suppression of nonsense mutations in many different genes by promoting readthrough of amber (UAG) chain-terminating codons.
Organism  Caenorhabditis elegans Automated Description  Expressed in several structures, including body wall musculature; hermaphrodite gonad; hypodermis; intestine; and vulva.
Biotype  SO:0001272 Genetic Position  III :-0.134112 ±0.010571
Length (nt)  ? 72
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00006314

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:B0523.t1 B0523.t1 72   III: 8678497-8678568
 

Other

0 CDSs

1 RNAi Result

WormBase ID
WBRNAi00000524

7 Allele

Public Name
gk964518
gk963887
e2060
e1877
e1864
e1464
ju1041

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
WBGene00006314 8678497 8678568 -1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

0 Downstream Intergenic Region

1 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly decreased expression in ogt-1(ok1474) neuronal cells isolated by FACs comparing to in FACs isolated neuronal cells from wild type. DESeq2, fold change > 2, FDR < 0.05. WBPaper00066485:ogt-1(ok1474)_downregulated_neuron

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
(See also table 1)   Expr13220 In young adults, sup-5 is predominantly expressed in neurons and in the vulva. Loss of intestinal expression and body neurons in adults.  

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier 		Start End Strand
WBGene00006314 8678497 8678568 -1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
72

1 Sequence Ontology Term