WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F54F2.5.1 Sequence Name  F54F2.5.1
Length (nt)  1936   Chromosome Location  III: 8787092-8792351
Chromosome . Primary Identifier  III Chromosome Location . Start  8787092
Chromosome Location . End  8792351 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F54F2.5.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00018833 hrpc-1 F54F2.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F54F2.5 F54F2.5 1749   III: 8787266-8787339

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F54F2.5.1 8787092 8792351 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

14 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon98845   248   III: 8787092-8787339 Caenorhabditis elegans
Exon98846   105   III: 8787396-8787500 Caenorhabditis elegans
Exon98848   177   III: 8787568-8787744 Caenorhabditis elegans
Exon98849   73   III: 8788155-8788227 Caenorhabditis elegans
Exon98850   165   III: 8788995-8789159 Caenorhabditis elegans
Exon98852   191   III: 8789669-8789859 Caenorhabditis elegans
Exon98853   81   III: 8789917-8789997 Caenorhabditis elegans
Exon98854   50   III: 8790046-8790095 Caenorhabditis elegans
Exon98855   126   III: 8790569-8790694 Caenorhabditis elegans
Exon98856   92   III: 8790840-8790931 Caenorhabditis elegans
Exon98857   114   III: 8790980-8791093 Caenorhabditis elegans
Exon98858   85   III: 8791404-8791488 Caenorhabditis elegans
Exon98860   134   III: 8791538-8791671 Caenorhabditis elegans
Exon98865   295   III: 8792057-8792351 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F54F2.5.1 8787092 8792351 -1

1 Sequence

Length
1936

1 Sequence Ontology Term

Identifier Name Description
transcript