WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F54F2.2a.1 Sequence Name  F54F2.2a.1
Length (nt)  3373   Chromosome Location  III: 8798398-8806305
Chromosome . Primary Identifier  III Chromosome Location . Start  8798398
Chromosome Location . End  8806305 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F54F2.2a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00006975 zfp-1 F54F2.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F54F2.2a F54F2.2a 2604   III: 8798555-8798663

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F54F2.2a.1 8798398 8806305 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon98904   67   III: 8798398-8798464 Caenorhabditis elegans
Exon98905   131   III: 8798533-8798663 Caenorhabditis elegans
Exon98913   256   III: 8798859-8799114 Caenorhabditis elegans
Exon98921   91   III: 8799395-8799485 Caenorhabditis elegans
Exon98930   111   III: 8799535-8799645 Caenorhabditis elegans
Exon98940   597   III: 8802825-8803421 Caenorhabditis elegans
Exon98949   544   III: 8803567-8804110 Caenorhabditis elegans
Exon98959   589   III: 8804284-8804872 Caenorhabditis elegans
Exon98969   133   III: 8804921-8805053 Caenorhabditis elegans
Exon98988   854   III: 8805452-8806305 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F54F2.2a.1 8798398 8806305 1

1 Sequence

Length
3373

1 Sequence Ontology Term

Identifier Name Description
transcript