WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:R08D7.6b.1 Sequence Name  R08D7.6b.1
Length (nt)  3225   Chromosome Location  III: 8975069-8981897
Chromosome . Primary Identifier  III Chromosome Location . Start  8975069
Chromosome Location . End  8981897 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
R08D7.6b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00011146 pde-2 R08D7.6 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:R08D7.6b R08D7.6b 2487   III: 8975658-8975858

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:R08D7.6b.1 8975069 8981897 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

11 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon99370   790   III: 8975069-8975858 Caenorhabditis elegans
Exon99372   222   III: 8975910-8976131 Caenorhabditis elegans
Exon99374   154   III: 8976490-8976643 Caenorhabditis elegans
Exon99376   893   III: 8977189-8978081 Caenorhabditis elegans
Exon99378   84   III: 8978138-8978221 Caenorhabditis elegans
Exon99380   110   III: 8978790-8978899 Caenorhabditis elegans
Exon99382   242   III: 8979935-8980176 Caenorhabditis elegans
Exon99384   245   III: 8980400-8980644 Caenorhabditis elegans
Exon99385   191   III: 8980923-8981113 Caenorhabditis elegans
Exon99388   66   III: 8981265-8981330 Caenorhabditis elegans
Exon99390   228   III: 8981670-8981897 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:R08D7.6b.1 8975069 8981897 -1

1 Sequence

Length
3225

1 Sequence Ontology Term

Identifier Name Description
transcript