WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F54G8.4a.1 Sequence Name  F54G8.4a.1
Length (nt)  3234   Chromosome Location  III: 9147395-9153902
Chromosome . Primary Identifier  III Chromosome Location . Start  9147395
Chromosome Location . End  9153902 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F54G8.4a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003597 nhl-1 F54G8.4 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F54G8.4a F54G8.4a 2925   III: 9147606-9147797

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F54G8.4a.1 9147395 9153902 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon99788   403   III: 9147395-9147797 Caenorhabditis elegans
Exon99789   135   III: 9147844-9147978 Caenorhabditis elegans
Exon99791   126   III: 9148025-9148150 Caenorhabditis elegans
Exon99794   1330   III: 9148442-9149771 Caenorhabditis elegans
Exon99796   135   III: 9150403-9150537 Caenorhabditis elegans
Exon99798   125   III: 9150591-9150715 Caenorhabditis elegans
Exon99800   84   III: 9150767-9150850 Caenorhabditis elegans
Exon99802   160   III: 9150929-9151088 Caenorhabditis elegans
Exon99804   344   III: 9151135-9151478 Caenorhabditis elegans
Exon99806   142   III: 9151524-9151665 Caenorhabditis elegans
Exon99808   110   III: 9153220-9153329 Caenorhabditis elegans
Exon99810   140   III: 9153763-9153902 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F54G8.4a.1 9147395 9153902 -1

1 Sequence

Length
3234

1 Sequence Ontology Term

Identifier Name Description
transcript