WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F54G8.4a.1 Sequence Name  F54G8.4a.1
Length (nt)  3234   Chromosome Location  III: 9147395-9153902
Chromosome . Primary Identifier  III Chromosome Location . Start  9147395
Chromosome Location . End  9153902 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F54G8.4a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003597 nhl-1 F54G8.4 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F54G8.4a F54G8.4a 2925   III: 9147606-9147797

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F54G8.4a.1 9147395 9153902 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon99821   403   III: 9147395-9147797 Caenorhabditis elegans
Exon99822   135   III: 9147844-9147978 Caenorhabditis elegans
Exon99824   126   III: 9148025-9148150 Caenorhabditis elegans
Exon99827   1330   III: 9148442-9149771 Caenorhabditis elegans
Exon99829   135   III: 9150403-9150537 Caenorhabditis elegans
Exon99831   125   III: 9150591-9150715 Caenorhabditis elegans
Exon99833   84   III: 9150767-9150850 Caenorhabditis elegans
Exon99835   160   III: 9150929-9151088 Caenorhabditis elegans
Exon99837   344   III: 9151135-9151478 Caenorhabditis elegans
Exon99839   142   III: 9151524-9151665 Caenorhabditis elegans
Exon99841   110   III: 9153220-9153329 Caenorhabditis elegans
Exon99843   140   III: 9153763-9153902 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F54G8.4a.1 9147395 9153902 -1

1 Sequence

Length
3234

1 Sequence Ontology Term

Identifier Name Description
transcript