WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:K04H4.2a.1 Sequence Name  K04H4.2a.1
Length (nt)  2421   Chromosome Location  III: 9347769-9355462
Chromosome . Primary Identifier  III Chromosome Location . Start  9347769
Chromosome Location . End  9355462 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
K04H4.2a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00010573 chtb-1 K04H4.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:K04H4.2a K04H4.2a 1887   III: 9348186-9348259

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:K04H4.2a.1 9347769 9355462 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon100198   491   III: 9347769-9348259 Caenorhabditis elegans
Exon100207   204   III: 9349170-9349373 Caenorhabditis elegans
Exon100210   684   III: 9349452-9350135 Caenorhabditis elegans
Exon100213   117   III: 9350182-9350298 Caenorhabditis elegans
Exon100216   129   III: 9350353-9350481 Caenorhabditis elegans
Exon100219   60   III: 9350530-9350589 Caenorhabditis elegans
Exon100224   126   III: 9351241-9351366 Caenorhabditis elegans
Exon100232   98   III: 9353527-9353624 Caenorhabditis elegans
Exon100235   103   III: 9353669-9353771 Caenorhabditis elegans
Exon100239   140   III: 9354663-9354802 Caenorhabditis elegans
Exon100242   118   III: 9354850-9354967 Caenorhabditis elegans
Exon100246   151   III: 9355312-9355462 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:K04H4.2a.1 9347769 9355462 -1

1 Sequence

Length
2421

1 Sequence Ontology Term

Identifier Name Description
transcript