WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:K04H4.2c.1 Sequence Name  K04H4.2c.1
Length (nt)  4392   Chromosome Location  III: 9348186-9355345
Chromosome . Primary Identifier  III Chromosome Location . Start  9348186
Chromosome Location . End  9355345 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
K04H4.2c.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00010573 chtb-1 K04H4.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:K04H4.2c K04H4.2c 4392   III: 9348186-9348259

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:K04H4.2c.1 9348186 9355345 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

22 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon100232   74   III: 9348186-9348259 Caenorhabditis elegans
Exon100235   141   III: 9348483-9348623 Caenorhabditis elegans
Exon100237   192   III: 9348677-9348868 Caenorhabditis elegans
Exon100239   147   III: 9348924-9349070 Caenorhabditis elegans
Exon100242   204   III: 9349170-9349373 Caenorhabditis elegans
Exon100245   684   III: 9349452-9350135 Caenorhabditis elegans
Exon100248   117   III: 9350182-9350298 Caenorhabditis elegans
Exon100251   129   III: 9350353-9350481 Caenorhabditis elegans
Exon100254   60   III: 9350530-9350589 Caenorhabditis elegans
Exon100255   249   III: 9350652-9350900 Caenorhabditis elegans
Exon100256   234   III: 9350948-9351181 Caenorhabditis elegans
Exon100259   126   III: 9351241-9351366 Caenorhabditis elegans
Exon100260   138   III: 9351625-9351762 Caenorhabditis elegans
Exon100261   220   III: 9351809-9352028 Caenorhabditis elegans
Exon100262   647   III: 9352075-9352721 Caenorhabditis elegans
Exon100263   438   III: 9352888-9353325 Caenorhabditis elegans
Exon100264   99   III: 9353376-9353474 Caenorhabditis elegans
Exon100267   98   III: 9353527-9353624 Caenorhabditis elegans
Exon100270   103   III: 9353669-9353771 Caenorhabditis elegans
Exon100274   140   III: 9354663-9354802 Caenorhabditis elegans
Exon100277   118   III: 9354850-9354967 Caenorhabditis elegans
Exon100278   34   III: 9355312-9355345 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:K04H4.2c.1 9348186 9355345 -1

1 Sequence

Length
4392

1 Sequence Ontology Term

Identifier Name Description
transcript