WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C38C10.5a.1 Sequence Name  C38C10.5a.1
Length (nt)  4657   Chromosome Location  III: 9393730-9404541
Chromosome . Primary Identifier  III Chromosome Location . Start  9393730
Chromosome Location . End  9404541 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C38C10.5a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004343 rgr-1 C38C10.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C38C10.5a C38C10.5a 4149   III: 9394104-9394247

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C38C10.5a.1 9393730 9404541 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

15 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon100308   201   III: 9393730-9393930 Caenorhabditis elegans
Exon100309   269   III: 9393979-9394247 Caenorhabditis elegans
Exon100311   1081   III: 9394299-9395379 Caenorhabditis elegans
Exon100313   601   III: 9395477-9396077 Caenorhabditis elegans
Exon100315   175   III: 9396525-9396699 Caenorhabditis elegans
Exon100318   159   III: 9397860-9398018 Caenorhabditis elegans
Exon100320   554   III: 9398228-9398781 Caenorhabditis elegans
Exon100322   209   III: 9399075-9399283 Caenorhabditis elegans
Exon100324   282   III: 9399369-9399650 Caenorhabditis elegans
Exon100326   65   III: 9400117-9400181 Caenorhabditis elegans
Exon100328   111   III: 9400225-9400335 Caenorhabditis elegans
Exon100333   120   III: 9403081-9403200 Caenorhabditis elegans
Exon100335   68   III: 9403257-9403324 Caenorhabditis elegans
Exon100337   356   III: 9403734-9404089 Caenorhabditis elegans
Exon100340   406   III: 9404136-9404541 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C38C10.5a.1 9393730 9404541 1

1 Sequence

Length
4657

1 Sequence Ontology Term

Identifier Name Description
transcript