WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C38C10.5b.1 Sequence Name  C38C10.5b.1
Length (nt)  4167   Chromosome Location  III: 9394104-9404359
Chromosome . Primary Identifier  III Chromosome Location . Start  9394104
Chromosome Location . End  9404359 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C38C10.5b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004343 rgr-1 C38C10.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C38C10.5b C38C10.5b 4167   III: 9394104-9394247

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C38C10.5b.1 9394104 9404359 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

15 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon100310   144   III: 9394104-9394247 Caenorhabditis elegans
Exon100312   1081   III: 9394299-9395379 Caenorhabditis elegans
Exon100314   601   III: 9395477-9396077 Caenorhabditis elegans
Exon100316   175   III: 9396525-9396699 Caenorhabditis elegans
Exon100317   18   III: 9396931-9396948 Caenorhabditis elegans
Exon100319   159   III: 9397860-9398018 Caenorhabditis elegans
Exon100321   554   III: 9398228-9398781 Caenorhabditis elegans
Exon100323   209   III: 9399075-9399283 Caenorhabditis elegans
Exon100325   282   III: 9399369-9399650 Caenorhabditis elegans
Exon100327   65   III: 9400117-9400181 Caenorhabditis elegans
Exon100329   111   III: 9400225-9400335 Caenorhabditis elegans
Exon100334   120   III: 9403081-9403200 Caenorhabditis elegans
Exon100336   68   III: 9403257-9403324 Caenorhabditis elegans
Exon100338   356   III: 9403734-9404089 Caenorhabditis elegans
Exon100339   224   III: 9404136-9404359 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C38C10.5b.1 9394104 9404359 1

1 Sequence

Length
4167

1 Sequence Ontology Term

Identifier Name Description
transcript