WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

CDS :

WormMine ID  CDS:F55H2.1a Sequence Name  F55H2.1a
Length (nt)  531   Chromosome Location  III: 9498360-9498370
Chromosome . Primary Identifier  III Chromosome Location . Start  9498360
Chromosome Location . End  9498370
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F55H2.1a

Proteins

1 Protein

WormBase ID Name Molecular Weight (kDa) Length Organism
CE25009 SOD-4, isoform a 18.2 176 Caenorhabditis elegans
 

Other

9 RNAi

WormBase ID
WBRNAi00048565
WBRNAi00085918
WBRNAi00085922
WBRNAi00015755
WBRNAi00076486
WBRNAi00006441
WBRNAi00085941
WBRNAi00028229
WBRNAi00092700

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
CDS:F55H2.1a 9498360 9498370 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans CDS sequence (Fasta)  

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004933 sod-4 F55H2.1 Caenorhabditis elegans

6 Locations


Feature . Primary Identifier
Start End Strand
CDS:F55H2.1a 9498360 9498370 -1
CDS:F55H2.1a 9498449 9498530 -1
CDS:F55H2.1a 9498907 9499002 -1
CDS:F55H2.1a 9499328 9499507 -1
CDS:F55H2.1a 9499554 9499654 -1
CDS:F55H2.1a 9500137 9500197 -1

1 Sequence

Length
531

1 Sequence Ontology Term

Identifier Name Description
CDS  

2 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:F55H2.1a.2 F55H2.1a.2 868   III: 9498158-9500375
Transcript:F55H2.1a.1 F55H2.1a.1 731   III: 9498165-9500202