WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C48B4.4b.1 Sequence Name  C48B4.4b.1
Length (nt)  5516   Chromosome Location  III: 9570390-9580081
Chromosome . Primary Identifier  III Chromosome Location . Start  9570390
Chromosome Location . End  9580081 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C48B4.4b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000421 ced-7 C48B4.4 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C48B4.4b C48B4.4b 5076   III: 9570688-9570882

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C48B4.4b.1 9570390 9580081 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

15 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon101018   493   III: 9570390-9570882 Caenorhabditis elegans
Exon101025   861   III: 9571423-9572283 Caenorhabditis elegans
Exon101030   255   III: 9572331-9572585 Caenorhabditis elegans
Exon101035   199   III: 9572639-9572837 Caenorhabditis elegans
Exon101040   260   III: 9572885-9573144 Caenorhabditis elegans
Exon101045   189   III: 9573224-9573412 Caenorhabditis elegans
Exon101050   185   III: 9573465-9573649 Caenorhabditis elegans
Exon101055   458   III: 9573696-9574153 Caenorhabditis elegans
Exon101060   986   III: 9575861-9576846 Caenorhabditis elegans
Exon101066   60   III: 9576974-9577033 Caenorhabditis elegans
Exon101070   970   III: 9577137-9578106 Caenorhabditis elegans
Exon101075   177   III: 9578445-9578621 Caenorhabditis elegans
Exon101080   146   III: 9578674-9578819 Caenorhabditis elegans
Exon101086   197   III: 9578986-9579182 Caenorhabditis elegans
Exon101090   80   III: 9580002-9580081 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C48B4.4b.1 9570390 9580081 -1

1 Sequence

Length
5516

1 Sequence Ontology Term

Identifier Name Description
transcript