WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C48B4.4a.1 Sequence Name  C48B4.4a.1
Length (nt)  5510   Chromosome Location  III: 9570398-9580089
Chromosome . Primary Identifier  III Chromosome Location . Start  9570398
Chromosome Location . End  9580089 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C48B4.4a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000421 ced-7 C48B4.4 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C48B4.4a C48B4.4a 5070   III: 9570688-9570882

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C48B4.4a.1 9570398 9580089 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

15 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon101020   485   III: 9570398-9570882 Caenorhabditis elegans
Exon101023   861   III: 9571423-9572283 Caenorhabditis elegans
Exon101028   255   III: 9572331-9572585 Caenorhabditis elegans
Exon101033   199   III: 9572639-9572837 Caenorhabditis elegans
Exon101038   260   III: 9572885-9573144 Caenorhabditis elegans
Exon101043   189   III: 9573224-9573412 Caenorhabditis elegans
Exon101048   179   III: 9573465-9573643 Caenorhabditis elegans
Exon101053   458   III: 9573696-9574153 Caenorhabditis elegans
Exon101058   986   III: 9575861-9576846 Caenorhabditis elegans
Exon101064   60   III: 9576974-9577033 Caenorhabditis elegans
Exon101068   970   III: 9577137-9578106 Caenorhabditis elegans
Exon101073   177   III: 9578445-9578621 Caenorhabditis elegans
Exon101078   146   III: 9578674-9578819 Caenorhabditis elegans
Exon101084   197   III: 9578986-9579182 Caenorhabditis elegans
Exon101091   88   III: 9580002-9580089 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C48B4.4a.1 9570398 9580089 -1

1 Sequence

Length
5510

1 Sequence Ontology Term

Identifier Name Description
transcript