WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C48B4.4a.2 Sequence Name  C48B4.4a.2
Length (nt)  5528   Chromosome Location  III: 9570398-9579840
Chromosome . Primary Identifier  III Chromosome Location . Start  9570398
Chromosome Location . End  9579840 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C48B4.4a.2

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000421 ced-7 C48B4.4 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C48B4.4a C48B4.4a 5070   III: 9570688-9570882

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C48B4.4a.2 9570398 9579840 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

15 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon101052   485   III: 9570398-9570882 Caenorhabditis elegans
Exon101057   861   III: 9571423-9572283 Caenorhabditis elegans
Exon101062   255   III: 9572331-9572585 Caenorhabditis elegans
Exon101067   199   III: 9572639-9572837 Caenorhabditis elegans
Exon101072   260   III: 9572885-9573144 Caenorhabditis elegans
Exon101077   189   III: 9573224-9573412 Caenorhabditis elegans
Exon101082   179   III: 9573465-9573643 Caenorhabditis elegans
Exon101087   458   III: 9573696-9574153 Caenorhabditis elegans
Exon101092   986   III: 9575861-9576846 Caenorhabditis elegans
Exon101098   60   III: 9576974-9577033 Caenorhabditis elegans
Exon101102   970   III: 9577137-9578106 Caenorhabditis elegans
Exon101107   177   III: 9578445-9578621 Caenorhabditis elegans
Exon101112   146   III: 9578674-9578819 Caenorhabditis elegans
Exon101118   197   III: 9578986-9579182 Caenorhabditis elegans
Exon101121   106   III: 9579735-9579840 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C48B4.4a.2 9570398 9579840 -1

1 Sequence

Length
5528

1 Sequence Ontology Term

Identifier Name Description
transcript