WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T05G5.5a.1 Sequence Name  T05G5.5a.1
Length (nt)  974   Chromosome Location  III: 9749584-9751432
Chromosome . Primary Identifier  III Chromosome Location . Start  9749584
Chromosome Location . End  9751432 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T05G5.5a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00011500 T05G5.5 T05G5.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T05G5.5a T05G5.5a 714   III: 9749711-9749895

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:T05G5.5a.1 9749584 9751432 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

6 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon101459   312   III: 9749584-9749895 Caenorhabditis elegans
Exon101462   170   III: 9749944-9750113 Caenorhabditis elegans
Exon101465   89   III: 9750336-9750424 Caenorhabditis elegans
Exon101468   128   III: 9750474-9750601 Caenorhabditis elegans
Exon101472   118   III: 9750809-9750926 Caenorhabditis elegans
Exon101474   157   III: 9751276-9751432 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:T05G5.5a.1 9749584 9751432 -1

1 Sequence

Length
974

1 Sequence Ontology Term

Identifier Name Description
transcript