WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T05G5.9b.1 Sequence Name  T05G5.9b.1
Length (nt)  1978   Chromosome Location  III: 9757794-9762143
Chromosome . Primary Identifier  III Chromosome Location . Start  9757794
Chromosome Location . End  9762143 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T05G5.9b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00011503 gcc-2 T05G5.9 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T05G5.9b T05G5.9b 1977   III: 9757794-9757864

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:T05G5.9b.1 9757794 9762143 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon101490   71   III: 9757794-9757864 Caenorhabditis elegans
Exon101492   217   III: 9758349-9758565 Caenorhabditis elegans
Exon101494   137   III: 9758609-9758745 Caenorhabditis elegans
Exon101496   52   III: 9758813-9758864 Caenorhabditis elegans
Exon101503   672   III: 9760385-9761056 Caenorhabditis elegans
Exon101505   112   III: 9761098-9761209 Caenorhabditis elegans
Exon101507   452   III: 9761257-9761708 Caenorhabditis elegans
Exon101509   93   III: 9761761-9761853 Caenorhabditis elegans
Exon101511   102   III: 9761913-9762014 Caenorhabditis elegans
Exon101513   70   III: 9762074-9762143 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:T05G5.9b.1 9757794 9762143 -1

1 Sequence

Length
1978

1 Sequence Ontology Term

Identifier Name Description
transcript