WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

CDS :

WormMine ID  CDS:T05G5.8a Sequence Name  T05G5.8a
Length (nt)  2397   Chromosome Location  III: 9753828-9754196
Chromosome . Primary Identifier  III Chromosome Location . Start  9753828
Chromosome Location . End  9754196
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T05G5.8a

Proteins

1 Protein

WormBase ID Name Molecular Weight (kDa) Length Organism
CE47826 VPS-53, isoform a 89.2 798 Caenorhabditis elegans
 

Other

5 RNAi

WormBase ID
WBRNAi00052570
WBRNAi00006073
WBRNAi00035231
WBRNAi00002405
WBRNAi00099101

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
CDS:T05G5.8a 9753828 9754196 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans CDS sequence (Fasta)  

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00011502 vps-53 T05G5.8 Caenorhabditis elegans

6 Locations


Feature . Primary Identifier
Start End Strand
CDS:T05G5.8a 9753828 9754196 -1
CDS:T05G5.8a 9754404 9754755 -1
CDS:T05G5.8a 9755038 9755406 -1
CDS:T05G5.8a 9755568 9756232 -1
CDS:T05G5.8a 9756827 9757129 -1
CDS:T05G5.8a 9757176 9757514 -1

1 Sequence

Length
2397

1 Sequence Ontology Term

Identifier Name Description
CDS  

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:T05G5.8a.1 T05G5.8a.1 2550   III: 9753675-9757514