WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F40F12.5a.1 Sequence Name  F40F12.5a.1
Length (nt)  3830   Chromosome Location  III: 9898604-9910658
Chromosome . Primary Identifier  III Chromosome Location . Start  9898604
Chromosome Location . End  9910658 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F40F12.5a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00009594 cyld-1 F40F12.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F40F12.5a F40F12.5a 3435   III: 9898998-9899147

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F40F12.5a.1 9898604 9910658 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

17 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon101959   544   III: 9898604-9899147 Caenorhabditis elegans
Exon101962   661   III: 9899310-9899970 Caenorhabditis elegans
Exon101965   249   III: 9900043-9900291 Caenorhabditis elegans
Exon101968   481   III: 9900339-9900819 Caenorhabditis elegans
Exon101971   409   III: 9900893-9901301 Caenorhabditis elegans
Exon101974   136   III: 9901590-9901725 Caenorhabditis elegans
Exon101977   149   III: 9901776-9901924 Caenorhabditis elegans
Exon101980   160   III: 9902567-9902726 Caenorhabditis elegans
Exon101983   103   III: 9902771-9902873 Caenorhabditis elegans
Exon101987   85   III: 9903819-9903903 Caenorhabditis elegans
Exon101989   105   III: 9906948-9907052 Caenorhabditis elegans
Exon101991   109   III: 9909088-9909196 Caenorhabditis elegans
Exon101992   77   III: 9909240-9909316 Caenorhabditis elegans
Exon101993   126   III: 9909597-9909722 Caenorhabditis elegans
Exon101994   240   III: 9910116-9910355 Caenorhabditis elegans
Exon101995   158   III: 9910411-9910568 Caenorhabditis elegans
Exon101996   38   III: 9910621-9910658 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F40F12.5a.1 9898604 9910658 -1

1 Sequence

Length
3830

1 Sequence Ontology Term

Identifier Name Description
transcript