WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F40F12.5b.1 Sequence Name  F40F12.5b.1
Length (nt)  3082   Chromosome Location  III: 9898604-9907052
Chromosome . Primary Identifier  III Chromosome Location . Start  9898604
Chromosome Location . End  9907052 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F40F12.5b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00009594 cyld-1 F40F12.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F40F12.5b F40F12.5b 2679   III: 9898998-9899147

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F40F12.5b.1 9898604 9907052 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

11 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon101960   544   III: 9898604-9899147 Caenorhabditis elegans
Exon101963   661   III: 9899310-9899970 Caenorhabditis elegans
Exon101966   249   III: 9900043-9900291 Caenorhabditis elegans
Exon101969   481   III: 9900339-9900819 Caenorhabditis elegans
Exon101972   409   III: 9900893-9901301 Caenorhabditis elegans
Exon101975   136   III: 9901590-9901725 Caenorhabditis elegans
Exon101978   149   III: 9901776-9901924 Caenorhabditis elegans
Exon101981   160   III: 9902567-9902726 Caenorhabditis elegans
Exon101984   103   III: 9902771-9902873 Caenorhabditis elegans
Exon101988   85   III: 9903819-9903903 Caenorhabditis elegans
Exon101990   105   III: 9906948-9907052 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F40F12.5b.1 9898604 9907052 -1

1 Sequence

Length
3082

1 Sequence Ontology Term

Identifier Name Description
transcript