WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T16G12.1.1 Sequence Name  T16G12.1.1
Length (nt)  5857   Chromosome Location  III: 10040181-10049857
Chromosome . Primary Identifier  III Chromosome Location . Start  10040181
Chromosome Location . End  10049857 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T16G12.1.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00011803 T16G12.1 T16G12.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T16G12.1 T16G12.1 5673   III: 10040251-10040499

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:T16G12.1.1 10040181 10049857 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

30 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon102309   319   III: 10040181-10040499 Caenorhabditis elegans
Exon102310   115   III: 10040550-10040664 Caenorhabditis elegans
Exon102311   186   III: 10041191-10041376 Caenorhabditis elegans
Exon102312   135   III: 10041422-10041556 Caenorhabditis elegans
Exon102313   350   III: 10041612-10041961 Caenorhabditis elegans
Exon102314   95   III: 10042009-10042103 Caenorhabditis elegans
Exon102315   208   III: 10042152-10042359 Caenorhabditis elegans
Exon102316   249   III: 10042493-10042741 Caenorhabditis elegans
Exon102317   284   III: 10042792-10043075 Caenorhabditis elegans
Exon102318   193   III: 10043417-10043609 Caenorhabditis elegans
Exon102319   205   III: 10043661-10043865 Caenorhabditis elegans
Exon102320   420   III: 10043938-10044357 Caenorhabditis elegans
Exon102321   89   III: 10044402-10044490 Caenorhabditis elegans
Exon102322   162   III: 10044558-10044719 Caenorhabditis elegans
Exon102323   115   III: 10044772-10044886 Caenorhabditis elegans
Exon102324   324   III: 10044936-10045259 Caenorhabditis elegans
Exon102325   74   III: 10045308-10045381 Caenorhabditis elegans
Exon102326   181   III: 10045433-10045613 Caenorhabditis elegans
Exon102327   111   III: 10045660-10045770 Caenorhabditis elegans
Exon102328   374   III: 10046151-10046524 Caenorhabditis elegans
Exon102329   249   III: 10046575-10046823 Caenorhabditis elegans
Exon102330   183   III: 10047053-10047235 Caenorhabditis elegans
Exon102331   328   III: 10047287-10047614 Caenorhabditis elegans
Exon102332   80   III: 10047666-10047745 Caenorhabditis elegans
Exon102336   79   III: 10047816-10047894 Caenorhabditis elegans
Exon102337   163   III: 10048326-10048488 Caenorhabditis elegans
Exon102338   150   III: 10048538-10048687 Caenorhabditis elegans
Exon102339   116   III: 10048743-10048858 Caenorhabditis elegans
Exon102340   103   III: 10049235-10049337 Caenorhabditis elegans
Exon102341   217   III: 10049641-10049857 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:T16G12.1.1 10040181 10049857 -1

1 Sequence

Length
5857

1 Sequence Ontology Term

Identifier Name Description
transcript