WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T16G12.5.1 Sequence Name  T16G12.5.1
Length (nt)  3232   Chromosome Location  III: 10064404-10069201
Chromosome . Primary Identifier  III Chromosome Location . Start  10064404
Chromosome Location . End  10069201 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T16G12.5.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00011806 ekl-6 T16G12.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T16G12.5 T16G12.5 2895   III: 10064423-10064477

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:T16G12.5.1 10064404 10069201 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon102357   74   III: 10064404-10064477 Caenorhabditis elegans
Exon102358   53   III: 10064648-10064700 Caenorhabditis elegans
Exon102360   679   III: 10064746-10065424 Caenorhabditis elegans
Exon102361   591   III: 10065735-10066325 Caenorhabditis elegans
Exon102362   344   III: 10066448-10066791 Caenorhabditis elegans
Exon102363   102   III: 10066844-10066945 Caenorhabditis elegans
Exon102364   211   III: 10067414-10067624 Caenorhabditis elegans
Exon102365   216   III: 10067690-10067905 Caenorhabditis elegans
Exon102366   470   III: 10067959-10068428 Caenorhabditis elegans
Exon102367   492   III: 10068710-10069201 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:T16G12.5.1 10064404 10069201 1

1 Sequence

Length
3232

1 Sequence Ontology Term

Identifier Name Description
transcript