WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

CDS :

WormMine ID  CDS:T16H12.5b Sequence Name  T16H12.5b
Length (nt)  1230   Chromosome Location  III: 10091204-10091353
Chromosome . Primary Identifier  III Chromosome Location . Start  10091204
Chromosome Location . End  10091353
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T16H12.5b

Proteins

1 Protein

WormBase ID Name Molecular Weight (kDa) Length Organism
CE00510 SPOP-1, isoform b 46.4 409 Caenorhabditis elegans
 

Other

4 RNAi

WormBase ID
WBRNAi00053437
WBRNAi00018784
WBRNAi00006052
WBRNAi00035624

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
CDS:T16H12.5b 10091204 10091353 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans CDS sequence (Fasta)  

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00011815 spop-1 T16H12.5 Caenorhabditis elegans

6 Locations


Feature . Primary Identifier
Start End Strand
CDS:T16H12.5b 10091204 10091353 -1
CDS:T16H12.5b 10091405 10091539 -1
CDS:T16H12.5b 10091733 10092131 -1
CDS:T16H12.5b 10092422 10092823 -1
CDS:T16H12.5b 10092882 10092995 -1
CDS:T16H12.5b 10093049 10093078 -1

1 Sequence

Length
1230

1 Sequence Ontology Term

Identifier Name Description
CDS  

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:T16H12.5b.1 T16H12.5b.1 1587   III: 10090903-10093134