WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:K08E5.3a.1 Sequence Name  K08E5.3a.1
Length (nt)  11573   Chromosome Location  III: 10160697-10183529
Chromosome . Primary Identifier  III Chromosome Location . Start  10160697
Chromosome Location . End  10183529 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
K08E5.3a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003482 mua-3 K08E5.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:K08E5.3a K08E5.3a 11304   III: 10160697-10160877

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:K08E5.3a.1 10160697 10183529 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

34 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon102648   181   III: 10160697-10160877 Caenorhabditis elegans
Exon102650   207   III: 10162928-10163134 Caenorhabditis elegans
Exon102651   228   III: 10163581-10163808 Caenorhabditis elegans
Exon102652   116   III: 10163869-10163984 Caenorhabditis elegans
Exon102653   246   III: 10164243-10164488 Caenorhabditis elegans
Exon102654   181   III: 10164952-10165132 Caenorhabditis elegans
Exon102655   90   III: 10165183-10165272 Caenorhabditis elegans
Exon102656   153   III: 10165334-10165486 Caenorhabditis elegans
Exon102657   85   III: 10165849-10165933 Caenorhabditis elegans
Exon102658   150   III: 10165984-10166133 Caenorhabditis elegans
Exon102659   65   III: 10166182-10166246 Caenorhabditis elegans
Exon102660   138   III: 10166956-10167093 Caenorhabditis elegans
Exon102664   153   III: 10170115-10170267 Caenorhabditis elegans
Exon102667   88   III: 10171361-10171448 Caenorhabditis elegans
Exon102669   62   III: 10171923-10171984 Caenorhabditis elegans
Exon102671   291   III: 10172925-10173215 Caenorhabditis elegans
Exon102673   212   III: 10173272-10173483 Caenorhabditis elegans
Exon102675   104   III: 10173533-10173636 Caenorhabditis elegans
Exon102677   461   III: 10173682-10174142 Caenorhabditis elegans
Exon102679   147   III: 10174443-10174589 Caenorhabditis elegans
Exon102681   70   III: 10174637-10174706 Caenorhabditis elegans
Exon102683   1100   III: 10174755-10175854 Caenorhabditis elegans
Exon102685   294   III: 10175907-10176200 Caenorhabditis elegans
Exon102687   181   III: 10176258-10176438 Caenorhabditis elegans
Exon102689   266   III: 10176482-10176747 Caenorhabditis elegans
Exon102691   315   III: 10176794-10177108 Caenorhabditis elegans
Exon102693   303   III: 10177161-10177463 Caenorhabditis elegans
Exon102695   1041   III: 10177527-10178567 Caenorhabditis elegans
Exon102697   441   III: 10178629-10179069 Caenorhabditis elegans
Exon102699   777   III: 10179120-10179896 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:K08E5.3a.1 10160697 10183529 1

1 Sequence

Length
11573

1 Sequence Ontology Term

Identifier Name Description
transcript