WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T20G5.5.1 Sequence Name  T20G5.5.1
Length (nt)  3352   Chromosome Location  III: 10189212-10195405
Chromosome . Primary Identifier  III Chromosome Location . Start  10189212
Chromosome Location . End  10195405 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T20G5.5.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004255 epac-1 T20G5.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T20G5.5 T20G5.5 3117   III: 10189218-10189341

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:T20G5.5.1 10189212 10195405 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

14 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon102717   130   III: 10189212-10189341 Caenorhabditis elegans
Exon102718   77   III: 10189387-10189463 Caenorhabditis elegans
Exon102719   147   III: 10189723-10189869 Caenorhabditis elegans
Exon102720   396   III: 10190139-10190534 Caenorhabditis elegans
Exon102721   225   III: 10191040-10191264 Caenorhabditis elegans
Exon102722   92   III: 10191322-10191413 Caenorhabditis elegans
Exon102723   357   III: 10191460-10191816 Caenorhabditis elegans
Exon102724   218   III: 10191870-10192087 Caenorhabditis elegans
Exon102725   104   III: 10192580-10192683 Caenorhabditis elegans
Exon102726   887   III: 10192740-10193626 Caenorhabditis elegans
Exon102727   91   III: 10193676-10193766 Caenorhabditis elegans
Exon102728   204   III: 10194420-10194623 Caenorhabditis elegans
Exon102729   108   III: 10194935-10195042 Caenorhabditis elegans
Exon102730   316   III: 10195090-10195405 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:T20G5.5.1 10189212 10195405 1

1 Sequence

Length
3352

1 Sequence Ontology Term

Identifier Name Description
transcript