WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T20G5.1.1 Sequence Name  T20G5.1.1
Length (nt)  5395   Chromosome Location  III: 10203821-10209704
Chromosome . Primary Identifier  III Chromosome Location . Start  10203821
Chromosome Location . End  10209704 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T20G5.1.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00011867 chc-1 T20G5.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T20G5.1 T20G5.1 5046   III: 10203872-10203994

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:T20G5.1.1 10203821 10209704 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon102747   174   III: 10203821-10203994 Caenorhabditis elegans
Exon102748   121   III: 10204042-10204162 Caenorhabditis elegans
Exon102749   365   III: 10204214-10204578 Caenorhabditis elegans
Exon102750   180   III: 10204625-10204804 Caenorhabditis elegans
Exon102751   861   III: 10204913-10205773 Caenorhabditis elegans
Exon102752   303   III: 10205818-10206120 Caenorhabditis elegans
Exon102753   1155   III: 10206168-10207322 Caenorhabditis elegans
Exon102754   1222   III: 10207369-10208590 Caenorhabditis elegans
Exon102755   579   III: 10208643-10209221 Caenorhabditis elegans
Exon102756   435   III: 10209270-10209704 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:T20G5.1.1 10203821 10209704 1

1 Sequence

Length
5395

1 Sequence Ontology Term

Identifier Name Description
transcript