WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:R01H10.8a.1 Sequence Name  R01H10.8a.1
Length (nt)  3047   Chromosome Location  III: 10271257-10278579
Chromosome . Primary Identifier  III Chromosome Location . Start  10271257
Chromosome Location . End  10278579 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
R01H10.8a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000564 cnk-1 R01H10.8 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:R01H10.8a R01H10.8a 2406   III: 10271304-10271385

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:R01H10.8a.1 10271257 10278579 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon102883   129   III: 10271257-10271385 Caenorhabditis elegans
Exon102885   117   III: 10271741-10271857 Caenorhabditis elegans
Exon102887   164   III: 10271909-10272072 Caenorhabditis elegans
Exon102889   339   III: 10272658-10272996 Caenorhabditis elegans
Exon102891   120   III: 10273758-10273877 Caenorhabditis elegans
Exon102893   392   III: 10274308-10274699 Caenorhabditis elegans
Exon102895   296   III: 10274974-10275269 Caenorhabditis elegans
Exon102897   196   III: 10276024-10276219 Caenorhabditis elegans
Exon102899   402   III: 10276281-10276682 Caenorhabditis elegans
Exon102901   69   III: 10277376-10277444 Caenorhabditis elegans
Exon102903   74   III: 10277653-10277726 Caenorhabditis elegans
Exon102906   749   III: 10277831-10278579 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:R01H10.8a.1 10271257 10278579 1

1 Sequence

Length
3047

1 Sequence Ontology Term

Identifier Name Description
transcript