WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00305993 Gene Name  H04D03.7
Sequence Name  ? H04D03.7 Organism  Caenorhabditis elegans
Automated Description  Is affected by ash-2 based on RNA-seq studies. Biotype  SO:0001217
Genetic Position  III:± Length (nt)  ? 1250
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00305993

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:H04D03.7.1 H04D03.7.1 812   III: 10445581-10446830
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:H04D03.7 H04D03.7 450   III: 10445805-10446156

0 RNAi Result

25 Allele

Public Name
gk964518
gk963887
gk963675
gk963676
gk963083
WBVar01267797
WBVar01267796
WBVar01542250
WBVar01332821
gk767553
gk374144
gk557158
WBVar01723521
WBVar00216441
WBVar00216437
gk960223
WBVar01409262
WBVar00178625
WBVar00178626
WBVar00237125
WBVar01645960
gk184104
gk184103
gk184102
WBVar00565055

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
WBGene00305993 10445581 10446830 -1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

1 Downstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrIII_10444947..10445580   634 III: 10444947-10445580 Caenorhabditis elegans

1 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly decreased expression in ash-2(RNAi) comparing to in wild type animals injected with vector. Differential mRNA expression using DESeq2. mRNAs with a FDR < 0.05 and fold change > 2 considered differentially expressed. WBPaper00066232:ash-2(RNAi)_downregulated_WT

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier
Start End Strand
WBGene00305993 10445581 10446830 -1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
1250

1 Sequence Ontology Term