WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:D2045.2.1 Sequence Name  D2045.2.1
Length (nt)  5578   Chromosome Location  III: 10452753-10460551
Chromosome . Primary Identifier  III Chromosome Location . Start  10452753
Chromosome Location . End  10460551 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
D2045.2.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00008422 ecps-1 D2045.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:D2045.2 D2045.2 5433   III: 10452897-10453389

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:D2045.2.1 10452753 10460551 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

17 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon103265   637   III: 10452753-10453389 Caenorhabditis elegans
Exon103266   301   III: 10453587-10453887 Caenorhabditis elegans
Exon103267   351   III: 10454019-10454369 Caenorhabditis elegans
Exon103268   1190   III: 10454544-10455733 Caenorhabditis elegans
Exon103269   344   III: 10455995-10456338 Caenorhabditis elegans
Exon103270   824   III: 10456502-10457325 Caenorhabditis elegans
Exon103271   193   III: 10457463-10457655 Caenorhabditis elegans
Exon103272   423   III: 10457706-10458128 Caenorhabditis elegans
Exon103273   276   III: 10458524-10458799 Caenorhabditis elegans
Exon103274   93   III: 10458846-10458938 Caenorhabditis elegans
Exon103275   142   III: 10458991-10459132 Caenorhabditis elegans
Exon103276   228   III: 10459406-10459633 Caenorhabditis elegans
Exon103277   144   III: 10459770-10459913 Caenorhabditis elegans
Exon103278   125   III: 10459960-10460084 Caenorhabditis elegans
Exon103279   111   III: 10460139-10460249 Caenorhabditis elegans
Exon103280   122   III: 10460308-10460429 Caenorhabditis elegans
Exon103281   74   III: 10460478-10460551 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:D2045.2.1 10452753 10460551 -1

1 Sequence

Length
5578

1 Sequence Ontology Term

Identifier Name Description
transcript