WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F43D9.3a.1 Sequence Name  F43D9.3a.1
Length (nt)  2427   Chromosome Location  III: 10507115-10513015
Chromosome . Primary Identifier  III Chromosome Location . Start  10507115
Chromosome Location . End  10513015 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F43D9.3a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00009654 sly-1 F43D9.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F43D9.3a F43D9.3a 2028   III: 10507160-10507199

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F43D9.3a.1 10507115 10513015 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon103377   85   III: 10507115-10507199 Caenorhabditis elegans
Exon103378   62   III: 10507254-10507315 Caenorhabditis elegans
Exon103380   98   III: 10507366-10507463 Caenorhabditis elegans
Exon103382   214   III: 10507515-10507728 Caenorhabditis elegans
Exon103384   237   III: 10508023-10508259 Caenorhabditis elegans
Exon103386   186   III: 10508860-10509045 Caenorhabditis elegans
Exon103388   201   III: 10509211-10509411 Caenorhabditis elegans
Exon103390   229   III: 10509696-10509924 Caenorhabditis elegans
Exon103392   178   III: 10510071-10510248 Caenorhabditis elegans
Exon103394   327   III: 10510979-10511305 Caenorhabditis elegans
Exon103396   98   III: 10512064-10512161 Caenorhabditis elegans
Exon103399   512   III: 10512504-10513015 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F43D9.3a.1 10507115 10513015 1

1 Sequence

Length
2427

1 Sequence Ontology Term

Identifier Name Description
transcript