WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y39A1A.23a.1 Sequence Name  Y39A1A.23a.1
Length (nt)  1736   Chromosome Location  III: 10621551-10626398
Chromosome . Primary Identifier  III Chromosome Location . Start  10621551
Chromosome Location . End  10626398 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y39A1A.23a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00001997 hpr-9 Y39A1A.23 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y39A1A.23a Y39A1A.23a 1566   III: 10621557-10621668

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y39A1A.23a.1 10621551 10626398 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon103727   118   III: 10621551-10621668 Caenorhabditis elegans
Exon103729   71   III: 10621718-10621788 Caenorhabditis elegans
Exon103731   126   III: 10621842-10621967 Caenorhabditis elegans
Exon103733   115   III: 10622016-10622130 Caenorhabditis elegans
Exon103735   106   III: 10622179-10622284 Caenorhabditis elegans
Exon103737   406   III: 10623218-10623623 Caenorhabditis elegans
Exon103739   56   III: 10624420-10624475 Caenorhabditis elegans
Exon103741   183   III: 10624529-10624711 Caenorhabditis elegans
Exon103745   72   III: 10624872-10624943 Caenorhabditis elegans
Exon103747   208   III: 10625379-10625586 Caenorhabditis elegans
Exon103751   100   III: 10626048-10626147 Caenorhabditis elegans
Exon103755   175   III: 10626224-10626398 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y39A1A.23a.1 10621551 10626398 1

1 Sequence

Length
1736

1 Sequence Ontology Term

Identifier Name Description
transcript