WormMine

WS296

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y39A1A.15e.2 Sequence Name  Y39A1A.15e.2
Length (nt)  3121   Chromosome Location  III: 10656890-10677519
Chromosome . Primary Identifier  III Chromosome Location . Start  10656890
Chromosome Location . End  10677519 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y39A1A.15e.2

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000566 cnt-2 Y39A1A.15 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y39A1A.15e Y39A1A.15e 2622   III: 10664524-10664532

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y39A1A.15e.2 10656890 10677519 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon103793   84   III: 10656890-10656973 Caenorhabditis elegans
Exon103804   59   III: 10664474-10664532 Caenorhabditis elegans
Exon103813   88   III: 10667690-10667777 Caenorhabditis elegans
Exon103820   230   III: 10667830-10668059 Caenorhabditis elegans
Exon103828   136   III: 10669205-10669340 Caenorhabditis elegans
Exon103837   593   III: 10672848-10673440 Caenorhabditis elegans
Exon103845   125   III: 10673895-10674019 Caenorhabditis elegans
Exon103854   1123   III: 10674509-10675631 Caenorhabditis elegans
Exon103863   162   III: 10676454-10676615 Caenorhabditis elegans
Exon103869   521   III: 10676999-10677519 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y39A1A.15e.2 10656890 10677519 1

1 Sequence

Length
3121

1 Sequence Ontology Term

Identifier Name Description
transcript