WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00197604 Gene Name  K01G5.12
Sequence Name  ? K01G5.12 Organism  Caenorhabditis elegans
Automated Description  Enriched in germ line and neurons based on RNA-seq and single-cell RNA-seq studies. Is affected by ogt-1 and ilc-17.1 based on RNA-seq studies. Biotype  SO:0001263
Genetic Position  :± Length (nt)  ? 372
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00197604

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:K01G5.12 K01G5.12 372   III: 10747787-10748158
 

Other

0 CDSs

0 RNAi Result

12 Allele

Public Name
gk964518
gk963887
gk963675
gk963676
gk963083
WBVar01825503
WBVar02123229
WBVar02124001
gk184756
WBVar00565407
WBVar00179111
tm5197

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
WBGene00197604 10747787 10748158 1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

0 Downstream Intergenic Region

5 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Neuronally enriched transcripts according to a comparison of neuronal nuclei IP samples to total nuclei using isolation of nuclei from tagged specific cell types (INTACT) technology. DESEQ2, fold change > 2 and FDR < 0.01. WBPaper00062103:neuron_enriched
  Transcripts that showed significantly increased expression in ilc-17.1(syb5296) comparing to in N2 animals at L4 larva stage. DESeq2, fold change > 2, FDR < 0.05. WBPaper00066594:ilc-17.1(syb5296)_upregulated
  Transcripts that showed significantly decreased expression in whole animal day 1 N2 adults comparing to in whole animal day 8 N2 adults. DESeq2, FDR < 0.05, fold change > 2. WBPaper00066978:Day1Adult_vs_Day8Adult_downregulated_neuron
  Transcripts that showed significantly decreased expression in ogt-1(ok1474) neuronal cells isolated by FACs comparing to in FACs isolated neuronal cells from wild type. DESeq2, fold change > 2, FDR < 0.05. WBPaper00066485:ogt-1(ok1474)_downregulated_neuron
  Single-cell RNA-Seq cell group 57_1 expressed in germline. scVI 0.6.0 WBPaper00065841:57_1

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier 		Start End Strand
WBGene00197604 10747787 10748158 1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
372

1 Sequence Ontology Term