WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y39A1B.3.1 Sequence Name  Y39A1B.3.1
Length (nt)  4665   Chromosome Location  III: 10763131-10777076
Chromosome . Primary Identifier  III Chromosome Location . Start  10763131
Chromosome Location . End  10777076 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y39A1B.3.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00001087 dpy-28 Y39A1B.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y39A1B.3 Y39A1B.3 4500   III: 10763147-10763274

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y39A1B.3.1 10763131 10777076 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

16 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon104121   144   III: 10763131-10763274 Caenorhabditis elegans
Exon104122   218   III: 10763943-10764160 Caenorhabditis elegans
Exon104123   275   III: 10765015-10765289 Caenorhabditis elegans
Exon104124   370   III: 10765942-10766311 Caenorhabditis elegans
Exon104125   524   III: 10767094-10767617 Caenorhabditis elegans
Exon104126   191   III: 10768442-10768632 Caenorhabditis elegans
Exon104127   90   III: 10768681-10768770 Caenorhabditis elegans
Exon104128   160   III: 10769051-10769210 Caenorhabditis elegans
Exon104129   850   III: 10769257-10770106 Caenorhabditis elegans
Exon104130   661   III: 10770876-10771536 Caenorhabditis elegans
Exon104131   156   III: 10772310-10772465 Caenorhabditis elegans
Exon104132   273   III: 10772785-10773057 Caenorhabditis elegans
Exon104133   87   III: 10774241-10774327 Caenorhabditis elegans
Exon104134   79   III: 10774375-10774453 Caenorhabditis elegans
Exon104135   207   III: 10775019-10775225 Caenorhabditis elegans
Exon104136   380   III: 10776697-10777076 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y39A1B.3.1 10763131 10777076 1

1 Sequence

Length
4665

1 Sequence Ontology Term

Identifier Name Description
transcript