WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y39A1B.2a.1 Sequence Name  Y39A1B.2a.1
Length (nt)  3040   Chromosome Location  III: 10781853-10791176
Chromosome . Primary Identifier  III Chromosome Location . Start  10781853
Chromosome Location . End  10791176 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y39A1B.2a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004233 ptr-19 Y39A1B.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y39A1B.2a Y39A1B.2a 3012   III: 10781881-10782146

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y39A1B.2a.1 10781853 10791176 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

15 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon104138   294   III: 10781853-10782146 Caenorhabditis elegans
Exon104141   112   III: 10782367-10782478 Caenorhabditis elegans
Exon104145   122   III: 10782887-10783008 Caenorhabditis elegans
Exon104151   81   III: 10785639-10785719 Caenorhabditis elegans
Exon104154   113   III: 10785904-10786016 Caenorhabditis elegans
Exon104157   104   III: 10786061-10786164 Caenorhabditis elegans
Exon104160   86   III: 10786215-10786300 Caenorhabditis elegans
Exon104163   84   III: 10786656-10786739 Caenorhabditis elegans
Exon104166   119   III: 10786789-10786907 Caenorhabditis elegans
Exon104169   470   III: 10788022-10788491 Caenorhabditis elegans
Exon104174   531   III: 10788991-10789521 Caenorhabditis elegans
Exon104176   117   III: 10789643-10789759 Caenorhabditis elegans
Exon104179   153   III: 10789809-10789961 Caenorhabditis elegans
Exon104180   258   III: 10790202-10790459 Caenorhabditis elegans
Exon104181   396   III: 10790781-10791176 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y39A1B.2a.1 10781853 10791176 1

1 Sequence

Length
3040

1 Sequence Ontology Term

Identifier Name Description
transcript