WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y39A1B.2c.1 Sequence Name  Y39A1B.2c.1
Length (nt)  2157   Chromosome Location  III: 10781881-10789824
Chromosome . Primary Identifier  III Chromosome Location . Start  10781881
Chromosome Location . End  10789824 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y39A1B.2c.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004233 ptr-19 Y39A1B.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y39A1B.2c Y39A1B.2c 2157   III: 10781881-10782146

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y39A1B.2c.1 10781881 10789824 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

13 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon104140   266   III: 10781881-10782146 Caenorhabditis elegans
Exon104143   112   III: 10782367-10782478 Caenorhabditis elegans
Exon104147   122   III: 10782887-10783008 Caenorhabditis elegans
Exon104153   81   III: 10785639-10785719 Caenorhabditis elegans
Exon104156   113   III: 10785904-10786016 Caenorhabditis elegans
Exon104159   104   III: 10786061-10786164 Caenorhabditis elegans
Exon104162   86   III: 10786215-10786300 Caenorhabditis elegans
Exon104165   84   III: 10786656-10786739 Caenorhabditis elegans
Exon104168   119   III: 10786789-10786907 Caenorhabditis elegans
Exon104171   470   III: 10788022-10788491 Caenorhabditis elegans
Exon104173   467   III: 10788991-10789457 Caenorhabditis elegans
Exon104177   117   III: 10789643-10789759 Caenorhabditis elegans
Exon104178   16   III: 10789809-10789824 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y39A1B.2c.1 10781881 10789824 1

1 Sequence

Length
2157

1 Sequence Ontology Term

Identifier Name Description
transcript