WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y48A6B.6c.1 Sequence Name  Y48A6B.6c.1
Length (nt)  1782   Chromosome Location  III: 11012564-11025293
Chromosome . Primary Identifier  III Chromosome Location . Start  11012564
Chromosome Location . End  11025293 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y48A6B.6c.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00012967 kvs-4 Y48A6B.6 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y48A6B.6c Y48A6B.6c 1485   III: 11012628-11012632

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y48A6B.6c.1 11012564 11025293 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

14 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon104491   69   III: 11012564-11012632 Caenorhabditis elegans
Exon104494   92   III: 11013594-11013685 Caenorhabditis elegans
Exon104496   96   III: 11014820-11014915 Caenorhabditis elegans
Exon104499   55   III: 11015051-11015105 Caenorhabditis elegans
Exon104504   179   III: 11020702-11020880 Caenorhabditis elegans
Exon104507   132   III: 11021867-11021998 Caenorhabditis elegans
Exon104510   113   III: 11022041-11022153 Caenorhabditis elegans
Exon104513   241   III: 11022293-11022533 Caenorhabditis elegans
Exon104516   78   III: 11022585-11022662 Caenorhabditis elegans
Exon104519   251   III: 11023124-11023374 Caenorhabditis elegans
Exon104522   134   III: 11023459-11023592 Caenorhabditis elegans
Exon104527   30   III: 11023757-11023786 Caenorhabditis elegans
Exon104530   71   III: 11024082-11024152 Caenorhabditis elegans
Exon104533   241   III: 11025053-11025293 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y48A6B.6c.1 11012564 11025293 1

1 Sequence

Length
1782

1 Sequence Ontology Term

Identifier Name Description
transcript