WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y48A6B.6a.1 Sequence Name  Y48A6B.6a.1
Length (nt)  1635   Chromosome Location  III: 11020440-11025292
Chromosome . Primary Identifier  III Chromosome Location . Start  11020440
Chromosome Location . End  11025292 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y48A6B.6a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00012967 kvs-4 Y48A6B.6 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y48A6B.6a Y48A6B.6a 1512   III: 11020440-11020579

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y48A6B.6a.1 11020440 11025292 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon104500   140   III: 11020440-11020579 Caenorhabditis elegans
Exon104502   179   III: 11020702-11020880 Caenorhabditis elegans
Exon104505   132   III: 11021867-11021998 Caenorhabditis elegans
Exon104508   113   III: 11022041-11022153 Caenorhabditis elegans
Exon104511   241   III: 11022293-11022533 Caenorhabditis elegans
Exon104514   78   III: 11022585-11022662 Caenorhabditis elegans
Exon104517   251   III: 11023124-11023374 Caenorhabditis elegans
Exon104520   134   III: 11023459-11023592 Caenorhabditis elegans
Exon104523   26   III: 11023651-11023676 Caenorhabditis elegans
Exon104525   30   III: 11023757-11023786 Caenorhabditis elegans
Exon104528   71   III: 11024082-11024152 Caenorhabditis elegans
Exon104532   240   III: 11025053-11025292 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y48A6B.6a.1 11020440 11025292 1

1 Sequence

Length
1635

1 Sequence Ontology Term

Identifier Name Description
transcript