WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y48A6B.6b.1 Sequence Name  Y48A6B.6b.1
Length (nt)  1806   Chromosome Location  III: 11012564-11025291
Chromosome . Primary Identifier  III Chromosome Location . Start  11012564
Chromosome Location . End  11025291 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y48A6B.6b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00012967 kvs-4 Y48A6B.6 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y48A6B.6b Y48A6B.6b 1620   III: 11012628-11012632

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y48A6B.6b.1 11012564 11025291 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

15 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon104525   69   III: 11012564-11012632 Caenorhabditis elegans
Exon104526   92   III: 11013594-11013685 Caenorhabditis elegans
Exon104528   96   III: 11014820-11014915 Caenorhabditis elegans
Exon104531   55   III: 11015051-11015105 Caenorhabditis elegans
Exon104536   179   III: 11020702-11020880 Caenorhabditis elegans
Exon104539   132   III: 11021867-11021998 Caenorhabditis elegans
Exon104542   113   III: 11022041-11022153 Caenorhabditis elegans
Exon104545   241   III: 11022293-11022533 Caenorhabditis elegans
Exon104548   78   III: 11022585-11022662 Caenorhabditis elegans
Exon104551   251   III: 11023124-11023374 Caenorhabditis elegans
Exon104554   134   III: 11023459-11023592 Caenorhabditis elegans
Exon104557   26   III: 11023651-11023676 Caenorhabditis elegans
Exon104559   30   III: 11023757-11023786 Caenorhabditis elegans
Exon104562   71   III: 11024082-11024152 Caenorhabditis elegans
Exon104564   239   III: 11025053-11025291 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y48A6B.6b.1 11012564 11025291 1

1 Sequence

Length
1806

1 Sequence Ontology Term

Identifier Name Description
transcript