WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y48A6B.13i.5 Sequence Name  Y48A6B.13i.5
Length (nt)  4086   Chromosome Location  III: 11036940-11063024
Chromosome . Primary Identifier  III Chromosome Location . Start  11036940
Chromosome Location . End  11063024 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y48A6B.13i.5

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00012973 spat-2 Y48A6B.13 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y48A6B.13i Y48A6B.13i 1197   III: 11056245-11056276

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y48A6B.13i.5 11036940 11063024 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

15 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon104560   125   III: 11036940-11037064 Caenorhabditis elegans
Exon104584   81   III: 11038431-11038511 Caenorhabditis elegans
Exon104605   167   III: 11042093-11042259 Caenorhabditis elegans
Exon104622   39   III: 11042952-11042990 Caenorhabditis elegans
Exon104636   126   III: 11043050-11043175 Caenorhabditis elegans
Exon104656   145   III: 11043864-11044008 Caenorhabditis elegans
Exon104676   70   III: 11044064-11044133 Caenorhabditis elegans
Exon104703   581   III: 11044935-11045515 Caenorhabditis elegans
Exon104724   127   III: 11052815-11052941 Caenorhabditis elegans
Exon104751   277   III: 11056000-11056276 Caenorhabditis elegans
Exon104773   118   III: 11057278-11057395 Caenorhabditis elegans
Exon104804   528   III: 11057920-11058447 Caenorhabditis elegans
Exon104832   220   III: 11058866-11059085 Caenorhabditis elegans
Exon104859   267   III: 11060702-11060968 Caenorhabditis elegans
Exon104892   1215   III: 11061810-11063024 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y48A6B.13i.5 11036940 11063024 1

1 Sequence

Length
4086

1 Sequence Ontology Term

Identifier Name Description
transcript