WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y48A6B.13i.1 Sequence Name  Y48A6B.13i.1
Length (nt)  4093   Chromosome Location  III: 11036943-11063027
Chromosome . Primary Identifier  III Chromosome Location . Start  11036943
Chromosome Location . End  11063027 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y48A6B.13i.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00012973 spat-2 Y48A6B.13 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y48A6B.13i Y48A6B.13i 1197   III: 11056245-11056276

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y48A6B.13i.1 11036943 11063027 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

15 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon104562   122   III: 11036943-11037064 Caenorhabditis elegans
Exon104580   81   III: 11038431-11038511 Caenorhabditis elegans
Exon104595   174   III: 11042086-11042259 Caenorhabditis elegans
Exon104618   39   III: 11042952-11042990 Caenorhabditis elegans
Exon104632   126   III: 11043050-11043175 Caenorhabditis elegans
Exon104652   145   III: 11043864-11044008 Caenorhabditis elegans
Exon104672   70   III: 11044064-11044133 Caenorhabditis elegans
Exon104701   581   III: 11044935-11045515 Caenorhabditis elegans
Exon104720   127   III: 11052815-11052941 Caenorhabditis elegans
Exon104747   277   III: 11056000-11056276 Caenorhabditis elegans
Exon104769   118   III: 11057278-11057395 Caenorhabditis elegans
Exon104800   528   III: 11057920-11058447 Caenorhabditis elegans
Exon104828   220   III: 11058866-11059085 Caenorhabditis elegans
Exon104855   267   III: 11060702-11060968 Caenorhabditis elegans
Exon104898   1218   III: 11061810-11063027 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y48A6B.13i.1 11036943 11063027 1

1 Sequence

Length
4093

1 Sequence Ontology Term

Identifier Name Description
transcript