WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y48A6B.13f.1 Sequence Name  Y48A6B.13f.1
Length (nt)  4119   Chromosome Location  III: 11036946-11063024
Chromosome . Primary Identifier  III Chromosome Location . Start  11036946
Chromosome Location . End  11063024 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y48A6B.13f.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00012973 spat-2 Y48A6B.13 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y48A6B.13f Y48A6B.13f 2898   III: 11036984-11037064

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y48A6B.13f.1 11036946 11063024 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

16 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon104564   119   III: 11036946-11037064 Caenorhabditis elegans
Exon104577   81   III: 11038431-11038511 Caenorhabditis elegans
Exon104600   167   III: 11042093-11042259 Caenorhabditis elegans
Exon104615   39   III: 11042952-11042990 Caenorhabditis elegans
Exon104629   126   III: 11043050-11043175 Caenorhabditis elegans
Exon104649   145   III: 11043864-11044008 Caenorhabditis elegans
Exon104669   70   III: 11044064-11044133 Caenorhabditis elegans
Exon104698   581   III: 11044935-11045515 Caenorhabditis elegans
Exon104716   127   III: 11052815-11052941 Caenorhabditis elegans
Exon104739   39   III: 11053858-11053896 Caenorhabditis elegans
Exon104743   277   III: 11056000-11056276 Caenorhabditis elegans
Exon104767   118   III: 11057278-11057395 Caenorhabditis elegans
Exon104796   528   III: 11057920-11058447 Caenorhabditis elegans
Exon104824   220   III: 11058866-11059085 Caenorhabditis elegans
Exon104851   267   III: 11060702-11060968 Caenorhabditis elegans
Exon104890   1215   III: 11061810-11063024 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y48A6B.13f.1 11036946 11063024 1

1 Sequence

Length
4119

1 Sequence Ontology Term

Identifier Name Description
transcript