WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y48A6B.13i.7 Sequence Name  Y48A6B.13i.7
Length (nt)  4042   Chromosome Location  III: 11036967-11063024
Chromosome . Primary Identifier  III Chromosome Location . Start  11036967
Chromosome Location . End  11063024 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y48A6B.13i.7

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00012973 spat-2 Y48A6B.13 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y48A6B.13i Y48A6B.13i 1197   III: 11056245-11056276

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y48A6B.13i.7 11036967 11063024 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

15 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon104569   98   III: 11036967-11037064 Caenorhabditis elegans
Exon104586   81   III: 11038431-11038511 Caenorhabditis elegans
Exon104597   174   III: 11042086-11042259 Caenorhabditis elegans
Exon104623   39   III: 11042952-11042990 Caenorhabditis elegans
Exon104638   126   III: 11043050-11043175 Caenorhabditis elegans
Exon104658   145   III: 11043864-11044008 Caenorhabditis elegans
Exon104678   70   III: 11044064-11044133 Caenorhabditis elegans
Exon104691   557   III: 11044935-11045491 Caenorhabditis elegans
Exon104726   127   III: 11052815-11052941 Caenorhabditis elegans
Exon104753   277   III: 11056000-11056276 Caenorhabditis elegans
Exon104775   118   III: 11057278-11057395 Caenorhabditis elegans
Exon104806   528   III: 11057920-11058447 Caenorhabditis elegans
Exon104834   220   III: 11058866-11059085 Caenorhabditis elegans
Exon104861   267   III: 11060702-11060968 Caenorhabditis elegans
Exon104894   1215   III: 11061810-11063024 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y48A6B.13i.7 11036967 11063024 1

1 Sequence

Length
4042

1 Sequence Ontology Term

Identifier Name Description
transcript