WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y48A6B.13k.1 Sequence Name  Y48A6B.13k.1
Length (nt)  2796   Chromosome Location  III: 11036984-11061841
Chromosome . Primary Identifier  III Chromosome Location . Start  11036984
Chromosome Location . End  11061841 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y48A6B.13k.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00012973 spat-2 Y48A6B.13 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y48A6B.13k Y48A6B.13k 2796   III: 11036984-11037064

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y48A6B.13k.1 11036984 11061841 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

14 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon104570   81   III: 11036984-11037064 Caenorhabditis elegans
Exon104587   81   III: 11038431-11038511 Caenorhabditis elegans
Exon104607   167   III: 11042093-11042259 Caenorhabditis elegans
Exon104640   126   III: 11043050-11043175 Caenorhabditis elegans
Exon104660   145   III: 11043864-11044008 Caenorhabditis elegans
Exon104680   70   III: 11044064-11044133 Caenorhabditis elegans
Exon104693   557   III: 11044935-11045491 Caenorhabditis elegans
Exon104728   127   III: 11052815-11052941 Caenorhabditis elegans
Exon104755   277   III: 11056000-11056276 Caenorhabditis elegans
Exon104777   118   III: 11057278-11057395 Caenorhabditis elegans
Exon104808   528   III: 11057920-11058447 Caenorhabditis elegans
Exon104836   220   III: 11058866-11059085 Caenorhabditis elegans
Exon104863   267   III: 11060702-11060968 Caenorhabditis elegans
Exon104879   32   III: 11061810-11061841 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y48A6B.13k.1 11036984 11061841 1

1 Sequence

Length
2796

1 Sequence Ontology Term

Identifier Name Description
transcript