WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y48A6B.13i.1 Sequence Name  Y48A6B.13i.1
Length (nt)  4093   Chromosome Location  III: 11036943-11063027
Chromosome . Primary Identifier  III Chromosome Location . Start  11036943
Chromosome Location . End  11063027 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y48A6B.13i.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00012973 spat-2 Y48A6B.13 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y48A6B.13i Y48A6B.13i 1197   III: 11056245-11056276

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y48A6B.13i.1 11036943 11063027 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

15 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon104595   122   III: 11036943-11037064 Caenorhabditis elegans
Exon104613   81   III: 11038431-11038511 Caenorhabditis elegans
Exon104628   174   III: 11042086-11042259 Caenorhabditis elegans
Exon104651   39   III: 11042952-11042990 Caenorhabditis elegans
Exon104665   126   III: 11043050-11043175 Caenorhabditis elegans
Exon104685   145   III: 11043864-11044008 Caenorhabditis elegans
Exon104705   70   III: 11044064-11044133 Caenorhabditis elegans
Exon104734   581   III: 11044935-11045515 Caenorhabditis elegans
Exon104753   127   III: 11052815-11052941 Caenorhabditis elegans
Exon104780   277   III: 11056000-11056276 Caenorhabditis elegans
Exon104802   118   III: 11057278-11057395 Caenorhabditis elegans
Exon104833   528   III: 11057920-11058447 Caenorhabditis elegans
Exon104861   220   III: 11058866-11059085 Caenorhabditis elegans
Exon104888   267   III: 11060702-11060968 Caenorhabditis elegans
Exon104931   1218   III: 11061810-11063027 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y48A6B.13i.1 11036943 11063027 1

1 Sequence

Length
4093

1 Sequence Ontology Term

Identifier Name Description
transcript