WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y48A6B.13o.1 Sequence Name  Y48A6B.13o.1
Length (nt)  2835   Chromosome Location  III: 11036984-11061841
Chromosome . Primary Identifier  III Chromosome Location . Start  11036984
Chromosome Location . End  11061841 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y48A6B.13o.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00012973 spat-2 Y48A6B.13 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y48A6B.13o Y48A6B.13o 2835   III: 11036984-11037064

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y48A6B.13o.1 11036984 11061841 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

15 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon104574   81   III: 11036984-11037064 Caenorhabditis elegans
Exon104591   81   III: 11038431-11038511 Caenorhabditis elegans
Exon104611   167   III: 11042093-11042259 Caenorhabditis elegans
Exon104625   39   III: 11042952-11042990 Caenorhabditis elegans
Exon104644   126   III: 11043050-11043175 Caenorhabditis elegans
Exon104664   145   III: 11043864-11044008 Caenorhabditis elegans
Exon104684   70   III: 11044064-11044133 Caenorhabditis elegans
Exon104695   557   III: 11044935-11045491 Caenorhabditis elegans
Exon104732   127   III: 11052815-11052941 Caenorhabditis elegans
Exon104759   277   III: 11056000-11056276 Caenorhabditis elegans
Exon104779   118   III: 11057278-11057395 Caenorhabditis elegans
Exon104812   528   III: 11057920-11058447 Caenorhabditis elegans
Exon104840   220   III: 11058866-11059085 Caenorhabditis elegans
Exon104867   267   III: 11060702-11060968 Caenorhabditis elegans
Exon104883   32   III: 11061810-11061841 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y48A6B.13o.1 11036984 11061841 1

1 Sequence

Length
2835

1 Sequence Ontology Term

Identifier Name Description
transcript