WormMine

WS296

Intermine data mining platform for C. elegans and related nematodes

Nc Primary Transcript :

WormMine ID  Transcript:Y48A6B.13j Sequence Name  Y48A6B.13j
Length (nt)  2905   Chromosome Location  III: 11036984-11061841
Chromosome . Primary Identifier  III Chromosome Location . Start  11036984
Chromosome Location . End  11061841 Method  non_coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y48A6B.13j

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00012973 spat-2 Y48A6B.13 Caenorhabditis elegans
 

Other

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y48A6B.13j 11036984 11061841 1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

16 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon104579   81   III: 11036984-11037064 Caenorhabditis elegans
Exon104596   81   III: 11038431-11038511 Caenorhabditis elegans
Exon104601   174   III: 11042086-11042259 Caenorhabditis elegans
Exon104631   39   III: 11042952-11042990 Caenorhabditis elegans
Exon104651   126   III: 11043050-11043175 Caenorhabditis elegans
Exon104671   145   III: 11043864-11044008 Caenorhabditis elegans
Exon104691   70   III: 11044064-11044133 Caenorhabditis elegans
Exon104711   581   III: 11044935-11045515 Caenorhabditis elegans
Exon104741   127   III: 11052815-11052941 Caenorhabditis elegans
Exon104743   39   III: 11053858-11053896 Caenorhabditis elegans
Exon104768   277   III: 11056000-11056276 Caenorhabditis elegans
Exon104786   118   III: 11057278-11057395 Caenorhabditis elegans
Exon104821   528   III: 11057920-11058447 Caenorhabditis elegans
Exon104849   220   III: 11058866-11059085 Caenorhabditis elegans
Exon104876   267   III: 11060702-11060968 Caenorhabditis elegans
Exon104891   32   III: 11061810-11061841 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y48A6B.13j 11036984 11061841 1

1 Sequence

Length
2905

1 Sequence Ontology Term

Identifier Name Description
transcript