WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y48A6B.13r.1 Sequence Name  Y48A6B.13r.1
Length (nt)  2577   Chromosome Location  III: 11042174-11061841
Chromosome . Primary Identifier  III Chromosome Location . Start  11042174
Chromosome Location . End  11061841 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y48A6B.13r.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00012973 spat-2 Y48A6B.13 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y48A6B.13r Y48A6B.13r 2577   III: 11042174-11042259

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y48A6B.13r.1 11042174 11061841 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon104614   86   III: 11042174-11042259 Caenorhabditis elegans
Exon104647   126   III: 11043050-11043175 Caenorhabditis elegans
Exon104667   145   III: 11043864-11044008 Caenorhabditis elegans
Exon104687   70   III: 11044064-11044133 Caenorhabditis elegans
Exon104707   581   III: 11044935-11045515 Caenorhabditis elegans
Exon104735   127   III: 11052815-11052941 Caenorhabditis elegans
Exon104762   277   III: 11056000-11056276 Caenorhabditis elegans
Exon104781   118   III: 11057278-11057395 Caenorhabditis elegans
Exon104815   528   III: 11057920-11058447 Caenorhabditis elegans
Exon104843   220   III: 11058866-11059085 Caenorhabditis elegans
Exon104870   267   III: 11060702-11060968 Caenorhabditis elegans
Exon104886   32   III: 11061810-11061841 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y48A6B.13r.1 11042174 11061841 1

1 Sequence

Length
2577

1 Sequence Ontology Term

Identifier Name Description
transcript