WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y48A6B.13i.8 Sequence Name  Y48A6B.13i.8
Length (nt)  3881   Chromosome Location  III: 11042084-11063040
Chromosome . Primary Identifier  III Chromosome Location . Start  11042084
Chromosome Location . End  11063040 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y48A6B.13i.8

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00012973 spat-2 Y48A6B.13 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y48A6B.13i Y48A6B.13i 1197   III: 11056245-11056276

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y48A6B.13i.8 11042084 11063040 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

13 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon104627   176   III: 11042084-11042259 Caenorhabditis elegans
Exon104657   39   III: 11042952-11042990 Caenorhabditis elegans
Exon104672   126   III: 11043050-11043175 Caenorhabditis elegans
Exon104692   145   III: 11043864-11044008 Caenorhabditis elegans
Exon104712   70   III: 11044064-11044133 Caenorhabditis elegans
Exon104725   557   III: 11044935-11045491 Caenorhabditis elegans
Exon104760   127   III: 11052815-11052941 Caenorhabditis elegans
Exon104787   277   III: 11056000-11056276 Caenorhabditis elegans
Exon104809   118   III: 11057278-11057395 Caenorhabditis elegans
Exon104840   528   III: 11057920-11058447 Caenorhabditis elegans
Exon104868   220   III: 11058866-11059085 Caenorhabditis elegans
Exon104895   267   III: 11060702-11060968 Caenorhabditis elegans
Exon104935   1231   III: 11061810-11063040 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y48A6B.13i.8 11042084 11063040 1

1 Sequence

Length
3881

1 Sequence Ontology Term

Identifier Name Description
transcript